Unlocking the Secrets of Brain Chemistry: How Amino Acids in Cerebrospinal Fluid Could Help Understand Epilepsy
Why Study Amino Acids in the Brain?

Epilepsy is a neurological condition that affects millions of people worldwide, including many children. While doctors have long known that certain brain chemicals (called neurotransmitters) play a role in epilepsy, understanding their exact impact has been a challenge.
Our new study has taken a deep dive into cerebrospinal fluid (CSF)—the liquid that surrounds and protects the brain and spinal cord—to analyze amino acid levels. Amino acids are the building blocks of proteins, but they also play a critical role in brain function, influencing mood, memory, and even seizure activity.
By studying a large group of children with and without epilepsy, researchers aimed to answer two key questions: 1. What are the normal levels of amino acids in children’s cerebrospinal fluid? 2. Are there significant differences in amino acid levels between children with epilepsy and those without?
How the Study Was Conducted
The research team analyzed CSF samples from over 400 children, including: - 201 children with epilepsy - 212 children with other neurological conditions (used as a comparison group)
They used a highly precise laboratory technique (called UPLC-MS/MS) to measure amino acid levels and then compared the results across different ages, epilepsy types, and treatments.
What Did the our Study Reveal?
1️⃣ Most Children with Epilepsy Had Normal Amino Acid Levels
One of the most striking findings was that more than 90% of children with epilepsy had normal amino acid levels in their CSF. This suggests that, for most young patients, epilepsy does not cause major disruptions in amino acid balance.
2️⃣ One Exception: The Role of Glutamine
While most amino acids remained stable across groups, one stood out: glutamine. The study found that children taking certain epilepsy medications (such as valproate or GABAA receptor agonists) had higher levels of glutamine in their CSF. This means that some epilepsy treatments may influence brain chemistry in ways that need to be better understood.
3️⃣ A Small Subgroup Showed Unusual Amino Acid Patterns
While the majority of children had typical amino acid levels, a small group of 24 children (mostly with epilepsy) had significantly elevated levels of multiple essential amino acids. Interestingly, most of these children had generalized epilepsy, a type that affects the entire brain rather than just one part. Essential amino acids, which the body cannot produce and must be obtained from the diet, rely entirely on the bloodstream to reach the brain. This discovery suggests that, for some patients, epilepsy may be linked to disruptions in the blood-brain barrier.
What Do These Findings Mean?
🔹 Better Reference Values for Diagnosis One of the biggest contributions of this study is the creation of age-specific reference values for amino acid levels in CSF. This means that doctors now have a more accurate tool to determine if a child’s amino acid levels are within a normal range.
🔹 Understanding Medication Effects The study confirms that some epilepsy medications, particularly valproate and GABAA receptor agonists, can alter amino acid levels—especially glutamine. This underscores the importance of accounting for these treatments when interpreting cerebrospinal fluid (CSF) analysis results.
🔹 Potential Clues for Future Research? The small group of children with elevated amino acid levels may indicate an impaired blood-brain barrier (BBB) permeability related to severe epilepsy. Future studies could explore BBB dysfunction and epileptogenic activity in altering amino acid levels further to understand their implications for epilepsy and potential therapeutic strategies.
A Step Toward Personalized Medicine
This research provides a valuable roadmap for understanding how amino acid levels interact with epilepsy and its treatments. While most children with epilepsy show no major changes in their CSF amino acid profile, a subset does—and these differences might hold important clues for future treatments.
By refining our understanding of brain chemistry, scientists and doctors are moving closer to personalized medicine, where epilepsy treatment can be tailored to the unique metabolic profile of each patient.
🔬 Want to explore the findings? Check out the new CSF amino acid reference calculator developed by the research team: Click Here